Splice site identification using probabilistic parameters and svm classification akma batenemail author, bch chang, sk halgamuge and jason li bmc bioinformatics20067(suppl 5):s15 © baten et al licensee biomed central ltd 2006 published: 18.
A splice site mutation is a genetic mutation that inserts, deletes or changes a number of nucleotides in the specific site at which splicing takes place during the processing of precursor messenger rna into mature messenger rna splice site consensus sequences that drive exon recognition are located at the very termini of.
Page 1 we propose a classifier that is built with maca (multiple attractor cellular automata) and mcc (modified clonal classifier) to predict both section 5 provides the experimental results with discussion section 6 provides the future extensions and conclusion to the pro- posed classifier 2 literature. Ais-maca- z: maca based clonal classifier for splicing site, protein coding and promoter region identification in eukaryotes pokkuluri kiran sree, inampudi ramesh babu, sssn usha devi n abstract bioinformatics incorporates information regarding biological data storage, accessing mechanisms.
Searches through a large space of sequence-based features to identify the netgene (4,5), maxentscan (6) and splicepredictor (7) convergence (9) for the splice-site prediction problem, two separate cmls classifiers are required, one for acceptor and one for donor sites after the training phase of these classifiers. Within the intron, a donor site (5' end of the intron), a branch site (near the 3' end of the intron) and an acceptor site (3' end of the intron) are required for splicing the splice donor site includes an almost invariant sequence gu at the 5' end of the intron, within a larger, less highly conserved region the splice acceptor site at.